added bash script to clean up code

Attractor.hpp

@@ -12,20 +12,20 @@ private:
 	AttractorKernel * myAttractor;
 
 public:
-	
+
 	// should be private really
 	std::vector<Projector *> projectors;
-	
+
 	Attractor(const char* const filename);
 	~Attractor();
-	
+
 	void init_range();
 	bool is_chaos();
-	
+
 	void iterate();
 	void plot();
 	void output();
-	
+
 };
 
 #endif // ATTRACTOR_HPP

AttractorKernel.cpp

@@ -16,7 +16,7 @@
 
 AttractorKernel::AttractorKernel(const unsigned int dimension, const unsigned int numberOfParameters) :
 numberOfParameters(numberOfParameters), dimension(dimension){
-	
+
 	try {
 		allocate();
 	}
@@ -24,7 +24,7 @@ numberOfParameters(numberOfParameters), dimension(dimension){
 		std::cout << "Couldn't construct AttractorKernel: " << e.what() << std::endl;
 		dealloc();
 	}
-	
+
 	std::fill_n(parameters, numberOfParameters, 0.0);
 	std::fill_n(vectorNew, dimension, 0.0);
 	std::fill_n(vectorOld, dimension, 0.0);
@@ -93,22 +93,22 @@ unsigned int AttractorKernel::getDimension() const{
 #include "kernels/Unravel3D.hpp"
 
 AttractorKernel * AttractorKernel::createAttractorKernel(stfu::node& attractor){
-	
+
 	AttractorKernel * myAttractor = NULL;
-	
+
 	// reading basic stuff
 	const std::string attractorType = attractor.getValue("type");
 	const std::string attractorDimension = attractor.getValue("dimensions");
-	
+
 //	  for ( unsigned int i = 0; attractorType[i] != '\0'; i++ ) {
 //		  attractorType[i] = tolower(attractorType[i]);
 //	  }
 	const unsigned int dimension = atoi(attractorDimension.c_str());
-	
+
 	std::cout << " Formula: " << attractorType << std::endl;
 	std::cout << " Dimensions: " << dimension << std::endl;
-	
-	
+
+
 	// depending on type, make the formula object
 	if ( attractorType == "lorenz" ){
 		if ( dimension == 3 ) {
@@ -122,7 +122,7 @@ AttractorKernel * AttractorKernel::createAttractorKernel(stfu::node& attractor){
 		const unsigned int orde = atoi(attractorOrde.c_str());
 		std::cout << " Orde: " << orde << std::endl;
 		myAttractor = new Polynomial(dimension, orde);
-		
+
 	} else if ( attractorType == "polynomial a" ) {
 		if ( dimension == 3 ) {
 			myAttractor = new PolynomialA3D();
@@ -143,19 +143,19 @@ AttractorKernel * AttractorKernel::createAttractorKernel(stfu::node& attractor){
 		std::cout << "'" << attractorType << "' not recognized" << std::endl;
 		exit(3);
 	}
-	
-	
+
+
 	// read parameters
 	const unsigned int numberOfParameters = myAttractor->getNumberOfParameters();
-	
+
 	for ( unsigned int i = 0; i < numberOfParameters; i++ ) {
 		stfu::node attractorParameters = attractor.getChild("parameters");
 		(*myAttractor)[i] = atof(attractorParameters.getValue(i).c_str());
 		std::cout << " Parameter " << i << " set to " << (*myAttractor)[i] << ",  ";
 	}
-	
+
 	std::cout << std::endl << " Reading file complete" << std::endl;
-	
+
 	return myAttractor;
 }
 

AttractorKernel.hpp

@@ -5,10 +5,10 @@
 
 class AttractorKernel {
 private:
-	
+
 	void allocate();
 	void dealloc();
-	
+
 protected:
 
 	// biggest type first, this will reduce sizeof(AttractorKernel)
@@ -16,14 +16,14 @@ protected:
 	double * parameters;
 	double * vectorNew;
 	double * vectorOld;
-	
+
 	unsigned int numberOfParameters;
 	unsigned int dimension;
 
 	// stuff used by subclasses
 	AttractorKernel(const unsigned int dimension, const unsigned int numberOfParameters);
 	void reallocParameters(const unsigned int numberOfParameters);
-	
+
 public:
 
 	// parameters are stored in a array of doubles
@@ -38,13 +38,13 @@ public:
 	double const * vector() const;
 	double const * previousVector() const;
 	unsigned int getDimension() const;
-	
+
 	// dtor, should be virtual for subclasses to be deleted
 	virtual ~AttractorKernel();
-	
+
 	// factory function
 	static AttractorKernel * createAttractorKernel(stfu::node& attractorKernel);
-	
+
 };
 
 #endif // ATTRACTORKERNEL_HPP

attractors/testUnravelNew.stf

@@ -25,7 +25,7 @@ projections: Applied in order they appear {
 	}
 	:{
 		type: "lineair map"
-		
+
 		matrix:
 		{
 			:{ :"1" :"0" :"0" }

cleanCode.sh

@@ -0,0 +1,12 @@
+
+DIRS="./*.cpp ./*.hpp ./kernels/*.cpp ./kernels/*.hpp ./attractors/*.stf"
+echo "This program will delete all trailing whitespaces and will replace spaces with tabs"
+
+for file in ${DIRS}
+do
+	echo "yay ${file}"
+	unexpand -t 4 ${file} | sed 's/[ \t]*$//' > ${file}.new
+	cat ${file}.new > ${file}
+	rm ${file}.new
+done
+

kernels/Logistic.hpp

@@ -5,9 +5,9 @@
 
 class Logistic : public AttractorKernel {
 private:
-	
+
 	void init();
-	
+
 public:
 
 	Logistic();

kernels/Lorenz3D.cpp

@@ -6,7 +6,7 @@
 #pragma mark ctors
 
 Lorenz3D::Lorenz3D():
-	AttractorKernel(3, 4){	
+	AttractorKernel(3, 4){
 	init();
 }
 

kernels/Lorenz3D.hpp

@@ -5,7 +5,7 @@
 
 class Lorenz3D : public AttractorKernel {
 private:
-	
+
 	void init();
 
 public:

kernels/Polynomial.cpp

@@ -15,7 +15,7 @@ unsigned int calculateNumberOfParameters(const unsigned int dimension, const uns
 	for (unsigned int i = 2; i <= dimension; i++) {
 		n_coef = n_coef*(orde + i)/(i - 1);
 	}
-	
+
 	const unsigned int output = (unsigned int) n_coef;
 	return output;
 }

kernels/Polynomial.hpp

@@ -5,7 +5,7 @@
 
 class Polynomial : public AttractorKernel {
 private:
-	
+
 	unsigned int orde;
 
 	void recur(unsigned int curr_dimension, unsigned int prev_i, unsigned int n, unsigned int& m, double prev_product=1.0);