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Updates the java code to use sub alphabets :)

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Joshua Moerman 2015-04-08 09:45:23 +02:00
parent c61df91202
commit ac4139fc31
2 changed files with 48 additions and 16 deletions
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25
java/Main.java
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@ -21,15 +21,15 @@ import net.automatalib.util.graphs.dot.GraphDOT;
import net.automatalib.words.Alphabet; import net.automatalib.words.Alphabet;
import net.automatalib.words.Word; import net.automatalib.words.Word;
import net.automatalib.words.WordBuilder; import net.automatalib.words.WordBuilder;
import net.automatalib.words.impl.Alphabets;
import javax.annotation.Nullable; import javax.annotation.Nullable;
import java.io.IOException; import java.io.IOException;
import java.io.PrintWriter; import java.io.PrintWriter;
import java.nio.file.Paths; import java.nio.file.Paths;
import java.util.Arrays; import java.util.*;
import java.util.Calendar;
import java.util.Collection; import static de.learnlib.cache.mealy.MealyCaches.createCache;
import java.util.Collections;
/** /**
* Test for the Lee and Yannakakis implementation. * Test for the Lee and Yannakakis implementation.
@ -42,7 +42,10 @@ public class Main {
System.out.println("Reading dot file: " + filename); System.out.println("Reading dot file: " + filename);
GraphvizParser p = new GraphvizParser(Paths.get(filename)); GraphvizParser p = new GraphvizParser(Paths.get(filename));
CompactMealy<String, String> fm = p.createMachine(); CompactMealy<String, String> fm = p.createMachine();
Alphabet<String> alphabet = fm.getInputAlphabet(); Alphabet<String> alphabet = fm.getInputAlphabet();
Alphabet<String> subAlphabet = Alphabets.fromArray("21.1", "21.0", "22", "53.4", "52.5");
List<Alphabet<String>> alphabets = Arrays.asList(subAlphabet, alphabet);
System.out.println("created machine with " + fm.size() + " states and " + alphabet.size() + " inputs\n"); System.out.println("created machine with " + fm.size() + " states and " + alphabet.size() + " inputs\n");
@ -64,12 +67,12 @@ public class Main {
SimulatorEQOracle.MealySimulatorEQOracle<String, String> eqOracleMealy = new SimulatorEQOracle.MealySimulatorEQOracle<>(fm); SimulatorEQOracle.MealySimulatorEQOracle<String, String> eqOracleMealy = new SimulatorEQOracle.MealySimulatorEQOracle<>(fm);
WpMethodEQOracle.MealyWpMethodEQOracle<String, String> eqOracleWp = new WpMethodEQOracle.MealyWpMethodEQOracle<>(3, mOracleCounting2); WpMethodEQOracle.MealyWpMethodEQOracle<String, String> eqOracleWp = new WpMethodEQOracle.MealyWpMethodEQOracle<>(3, mOracleCounting2);
WMethodEQOracle.MealyWMethodEQOracle<String, String> eqOracleW = new WMethodEQOracle.MealyWMethodEQOracle<>(2, mOracleCounting2); WMethodEQOracle.MealyWMethodEQOracle<String, String> eqOracleW = new WMethodEQOracle.MealyWMethodEQOracle<>(2, mOracleCounting2);
EquivalenceOracle.MealyEquivalenceOracle<String, String> eqOracleYannakakis = new YannakakisEQOracle<>(mOracleCounting2); EquivalenceOracle.MealyEquivalenceOracle<String, String> eqOracleYannakakis = new YannakakisEQOracle<>(alphabets, mOracleCounting2);
EquivalenceOracle.MealyEquivalenceOracle<String, String> eqOracleSpecific = new SpecificCounterExampleOracle(mOracleCounting2); EquivalenceOracle.MealyEquivalenceOracle<String, String> eqOracleSpecific = new SpecificCounterExampleOracle(mOracleCounting2);
EQOracleChain.MealyEQOracleChain eqOracleYannakakisPlus = new EQOracleChain.MealyEQOracleChain(Arrays.asList(eqOracleSpecific, eqOracleYannakakis)); EQOracleChain.MealyEQOracleChain eqOracleYannakakisPlus = new EQOracleChain.MealyEQOracleChain(Arrays.asList(eqOracleSpecific, eqOracleYannakakis));
// The chosen oracle to experiment with. // The chosen oracle to experiment with.
EQOracleChain.MealyEQOracleChain eqOracle = eqOracleYannakakisPlus; EquivalenceOracle.MealyEquivalenceOracle<String, String> eqOracle = eqOracleYannakakis;
// Learnlib comes with different learning algorithms // Learnlib comes with different learning algorithms
@ -95,11 +98,11 @@ public class Main {
learner.refineHypothesis(ce); learner.refineHypothesis(ce);
// FIXME: Make this a command line option // FIXME: Make this a command line option
String dir = "/Users/joshua/Documents/PhD/Machines/Mealy/esms3/"; // String dir = "/Users/joshua/Documents/PhD/Machines/Mealy/esms3/";
String filenameh = dir + "hyp." + stage + ".obf.dot"; // String filenameh = dir + "hyp." + stage + ".obf.dot";
PrintWriter output = new PrintWriter(filenameh); // PrintWriter output = new PrintWriter(filenameh);
GraphDOT.write(learner.getHypothesisModel(), alphabet, output); // GraphDOT.write(learner.getHypothesisModel(), alphabet, output);
output.close(); // output.close();
System.out.println(stage++ + ": " + Calendar.getInstance().getTime()); System.out.println(stage++ + ": " + Calendar.getInstance().getTime());
System.out.println("Hypothesis has " + learner.getHypothesisModel().getStates().size() + " states"); System.out.println("Hypothesis has " + learner.getHypothesisModel().getStates().size() + " states");

39
java/YannakakisEQOracle.java
View file

@ -5,14 +5,13 @@ import de.learnlib.api.MembershipOracle;
import de.learnlib.oracles.DefaultQuery; import de.learnlib.oracles.DefaultQuery;
import net.automatalib.automata.transout.MealyMachine; import net.automatalib.automata.transout.MealyMachine;
import net.automatalib.util.graphs.dot.GraphDOT; import net.automatalib.util.graphs.dot.GraphDOT;
import net.automatalib.words.Alphabet;
import net.automatalib.words.Word; import net.automatalib.words.Word;
import net.automatalib.words.WordBuilder; import net.automatalib.words.WordBuilder;
import javax.annotation.Nullable; import javax.annotation.Nullable;
import java.io.*; import java.io.*;
import java.util.Collection; import java.util.*;
import java.util.Collections;
import java.util.Scanner;
/** /**
* Implements the Lee & Yannakakis suffixes by invoking an external program. Because of this indirection to an external * Implements the Lee & Yannakakis suffixes by invoking an external program. Because of this indirection to an external
@ -23,8 +22,12 @@ import java.util.Scanner;
*/ */
public class YannakakisEQOracle<O> implements EquivalenceOracle.MealyEquivalenceOracle<String, O> { public class YannakakisEQOracle<O> implements EquivalenceOracle.MealyEquivalenceOracle<String, O> {
private final MembershipOracle<String, Word<O>> sulOracle; private final MembershipOracle<String, Word<O>> sulOracle;
private final List<Alphabet<String>> alphabets;
private final ProcessBuilder pb; private final ProcessBuilder pb;
int currentAlphabet = 0;
private long bound = 100;
private Process process; private Process process;
private Writer processInput; private Writer processInput;
private BufferedReader processOutput; private BufferedReader processOutput;
@ -35,9 +38,10 @@ public class YannakakisEQOracle<O> implements EquivalenceOracle.MealyEquivalence
* @param sulOracle The membership oracle of the SUL, we need this to check the output on the test suite * @param sulOracle The membership oracle of the SUL, we need this to check the output on the test suite
* @throws IOException * @throws IOException
*/ */
YannakakisEQOracle(MembershipOracle<String, Word<O>> sulOracle) throws IOException { YannakakisEQOracle(List<Alphabet<String>> alphabets, MembershipOracle<String, Word<O>> sulOracle) throws IOException {
this.sulOracle = sulOracle; this.sulOracle = sulOracle;
pb = new ProcessBuilder("/Users/joshua/Documents/Code/Kweekvijver/Yannakakis/build/main", "--", "1", "stream"); this.alphabets = alphabets;
pb = new ProcessBuilder("/Users/joshua/Documents/PhD/Yannakakis/build/main", "--", "1", "stream");
} }
/** /**
@ -113,12 +117,29 @@ public class YannakakisEQOracle<O> implements EquivalenceOracle.MealyEquivalence
@Nullable @Nullable
@Override @Override
public DefaultQuery<String, Word<O>> findCounterExample(MealyMachine<?, String, ?, O> machine, Collection<? extends String> inputs) { public DefaultQuery<String, Word<O>> findCounterExample(MealyMachine<?, String, ?, O> machine, Collection<? extends String> inputs) {
// we're ignoring the external alphabet, only our own are used!
while(true) {
// start where we left previously
for(; currentAlphabet < alphabets.size(); ++currentAlphabet){
System.err.println("ERROR> log> Testing with subalphabet " + currentAlphabet);
Alphabet<String> a = alphabets.get(currentAlphabet);
DefaultQuery<String, Word<O>> r = findCounterExampleImpl(machine, a, bound);
if (r != null) return r;
}
System.err.println("ERROR> log> Increasing bound by a factor of 10");
currentAlphabet = 0;
bound *= 10;
}
}
private DefaultQuery<String, Word<O>> findCounterExampleImpl(MealyMachine<?, String, ?, O> machine, Collection<? extends String> inputs, long bound) {
try { try {
setupProcess(); setupProcess();
} catch (IOException e) { } catch (IOException e) {
throw new RuntimeException("Unable to start the external program: " + e); throw new RuntimeException("Unable to start the external program: " + e);
} }
long queryCount = 0;
try { try {
// Write the hypothesis to stdin of the external program // Write the hypothesis to stdin of the external program
GraphDOT.write(machine, inputs, processInput); GraphDOT.write(machine, inputs, processInput);
@ -127,6 +148,14 @@ public class YannakakisEQOracle<O> implements EquivalenceOracle.MealyEquivalence
// Read every line outputted on stdout. // Read every line outputted on stdout.
String line; String line;
while ((line = processOutput.readLine()) != null) { while ((line = processOutput.readLine()) != null) {
// Break if we did not fin one in time
++queryCount;
if(queryCount > bound) {
System.err.println("ERROR> log> Bound is reached");
closeAll();
return null;
}
// Read every string of the line, this will be a symbol of the input sequence. // Read every string of the line, this will be a symbol of the input sequence.
WordBuilder<String> wb = new WordBuilder<>(); WordBuilder<String> wb = new WordBuilder<>();
Scanner s = new Scanner(line); Scanner s = new Scanner(line);